old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 50045 [4u77_2014-08-08_00000066_1_11] [2014-08-08] [131.152.x.x] [Structure] [Complete]

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!



Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130 
 
MGEVKSVKVDNWGVFFLQKLQNFFNKTDYCDLTLQFRDNSQLKVHRLVLSACTDYFNVLEQTCEIVDDALIMPNEFQADVVVPIVNFMYTGTLEFELKMYGKLLRTAKEMNMTVLLKLLEAHRRTMENVNRQQRhhhhhh
tmhmm (0)
--------------------------------------------------------------------------------------------------------------------------------------      
low complexity (0%)
--------------------------------------------------------------------------------------------------------------------------------------      
coiled-coils (0%)
--------------------------------------------------------------------------------------------------------------------------------------      
disordered (15%)
XX------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX      
psipred
----EEEEE--HHHHHHHHHHHHHH----EEEEEEE---EEEEHHHHHHHHH-HHHHHHH---------EEEE----HHHHHHHHH-----EEEE-HHHHHHHHHHHHH---HHHHHHHHHHHHHH--------      

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    23	    0.108
  max. Y     2	    0.138
  max. S     1	    0.186
  mean S     1-1    0.186
       D     1-1    0.164    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.164 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-134     alignment     2z8hA_302     1-137   0.8022   TRANSCRIPTION


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
7227Drosophila melanogaster139 (3.48%)9E-391-1341-134165100134ref|NP_524359.2|centrosomal protein 190kD, isoform A [Drosophila melanogaste...
7245Drosophila yakuba27 (0.68%)1E-381-1341-134164100134ref|XP_002097770.1|Cen190 [Drosophila yakuba] gb|EDW97482.1| Cen190 [Drosophila...
7220Drosophila erecta29 (0.73%)2E-381-1341-134164100134ref|XP_001980025.1|GG20737 [Drosophila erecta] gb|EDV48983.1| GG20737 [Drosophi...
7238Drosophila sechellia28 (0.7%)1E-371-1341-134161100134ref|XP_002031096.1|GM25789 [Drosophila sechellia] gb|EDW42082.1| GM25789 [Droso...
46245Drosophila pseudoobscura pseudoobscura68 (1.7%)6E-401-1341-13416999134ref|XP_001359898.2|GA19554 [Drosophila pseudoobscura pseudoobscura] gb|EAL29050...
7234Drosophila persimilis23 (0.58%)8E-401-1341-13416899134ref|XP_002019705.1|GL12069 [Drosophila persimilis] gb|EDW38339.1| GL12069 [Dros...
7217Drosophila ananassae29 (0.73%)5E-391-1341-13416599134ref|XP_001965941.1|GF11747 [Drosophila ananassae] gb|EDV35308.1| GF11747 [Droso...
7260Drosophila willistoni25 (0.63%)2E-381-1341-13416499134ref|XP_002072800.1|GK13490 [Drosophila willistoni] gb|EDW83786.1| GK13490 [Dros...
7244Drosophila virilis30 (0.75%)5E-381-1341-13416299134ref|XP_002053697.1|GJ24037 [Drosophila virilis] gb|EDW67217.1| GJ24037 [Drosoph...
7230Drosophila mojavensis29 (0.73%)6E-391-1341-13416598134ref|XP_001999701.1|GI24664 [Drosophila mojavensis] gb|EDW15162.1| GI24664 [Dros...
7222Drosophila grimshawi36 (0.9%)7E-391-1341-13416598134ref|XP_001989536.1|GH18747 [Drosophila grimshawi] gb|EDV92598.1| GH18747 [Droso...
29760Vitis vinifera3 (0.08%)8E-2320-130514-62911227116emb|CAN75981.1|hypothetical protein VITISV_012185 [Vitis vinifera]
7029Acyrthosiphon pisum130 (3.25%)4E-372-1265-12815925125ref|XP_001947249.1|PREDICTED: hypothetical protein LOC100159948 isoform 1 [Acyr...
7536Oncopeltus fasciatus1 (0.03%)4E-331-1171-11714625119gb|ABA02191.1|broad [Oncopeltus fasciatus]
9595Gorilla gorilla gorilla10 (0.25%)3E-327-12313-13014325118ref|XP_004032808.1|PREDICTED: kelch-like protein 23 [Gorilla gorilla gorilla]
3880Medicago truncatula1 (0.03%)3E-2220-130528-64211025116ref|XP_003592432.1|Speckle-type POZ protein-like protein [Medicago truncatula] ...
10244Monkeypox virus1 (0.03%)3E-528-775-55542552ref|NP_536606.1|B18R [Monkeypox virus Zaire-96-I-16] gb|AAL40637.1|AF380138_...
77166Dendroctonus ponderosae27 (0.68%)4E-392-1324-13016624131gb|ENN76106.1|hypothetical protein YQE_07366, partial [Dendroctonus ponder...
7176Culex quinquefasciatus28 (0.7%)1E-373-12857-18116124127ref|XP_001861627.1|bric-a-brac [Culex quinquefasciatus] gb|EDS35887.1| bric-a-b...
7159Aedes aegypti98 (2.45%)2E-373-11856-16916024116ref|XP_001660259.1|bric-a-brac [Aedes aegypti] gb|EAT47129.1| AAEL001739-PA [Ae...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington