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Job 50648 [4wcw_2014-09-19_00000050_1_11] [2014-09-19] [131.152.x.x] [Structure] [Complete]

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!



Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130 
 
MTANREAIDMARVAAGAAAAKLADDVVVIDVSGQLVITDCFVIASGSNERQVNAIVDEVEEKMRQAGYRPARREGAREGRWTLLDYRDIVVHIQHQDDRNFAALDRLWGDCPVVPVDLSANSAGAQKLAAALEhhhhhh
tmhmm (0)
-------------------------------------------------------------------------------------------------------------------------------------      
low complexity (30%)
------XXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------XXXXXXXXXXXXXXX-----------------------------------------------------      
coiled-coils (0%)
-------------------------------------------------------------------------------------------------------------------------------------      
disordered (21%)
XXXX----------------------------------------------------------------XXXXXX-----------------------------------------XXXXXXXXXXXXXXXXXX      
psipred
----HHHHHHHHHHHHHHHH-----EEEEE---------EEEEEE---HHHHHHHHHHHHHHHHHH--------------EEEEE---EEEEE--HHHHHH--HHHHH-------------------------      

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    55	    0.140
  max. Y     9	    0.156
  max. S     3	    0.366
  mean S     1-8    0.262
       D     1-8    0.205    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.205 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-133     alignment     2id1B_301     1-120   0.8145   STRUCTURAL GENOMICS, UNKNOWN FUNCTION


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
443150Mycobacterium tuberculosis CCDC51801 (0.04%)1E-411-1261-12617499126ref|NP_216936.1|Conserved hypothetical protein [Mycobacterium tuberculosis H...
998092Mycobacterium bovis BCG str. ATCC 357431 (0.04%)1E-411-1251-12517499125ref|YP_978525.1|hypothetical protein BCG_2436c [Mycobacterium bovis BCG str....
520141Mycobacterium tuberculosis T851 (0.04%)7E-321-10125-12514299101ref|WP_003905843.1|conserved hypothetical protein [Mycobacterium tuberculosis] ...
675522Mycobacterium tuberculosis SUMu0111 (0.04%)1E-411-1261-12617498126ref|WP_003911864.1|hypothetical protein [Mycobacterium tuberculosis] gb|EFO7433...
1304279Mycobacterium tuberculosis str. Haarlem/NITR2021 (0.04%)6E-411-1261-12617298126ref|YP_007958456.1|hypothetical protein I917_17080 [Mycobacterium tuberculosis ...
611303Mycobacterium tuberculosis CPHL_A1 (0.04%)8E-411-1261-12617298126ref|WP_003909661.1|iojap protein 155 [Mycobacterium tuberculosis] gb|EFD18221.1...
1306414Mycobacterium tuberculosis EAI51 (0.04%)5E-411-1261-12617298126ref|YP_007966338.1|hypothetical protein J114_12965 [Mycobacterium tuberculosis ...
1299327Mycobacterium kansasii 7321 (0.04%)3E-341-1261-12615089126gb|EUA12945.1|oligomerization domain protein [Mycobacterium kansasii 732]
525368Mycobacterium parascrofulaceum ATCC BAA-6141 (0.04%)3E-371-1271-12716087127ref|WP_007169526.1|Iojap family protein [Mycobacterium parascrofulaceum] gb|EFG...
1299326Mycobacterium kansasii 6621 (0.04%)2E-341-1261-12615087126ref|YP_008748605.1|iojap family protein [Mycobacterium kansasii ATCC 12478] ref...
1299333Mycobacterium xenopi 39931 (0.04%)4E-3321-1229-11014685102gb|EUA18254.1|oligomerization domain protein [Mycobacterium xenopi 3993]
710421Mycobacterium chubuense NBB41 (0.04%)9E-3221-11612-1071428596ref|YP_006453832.1|iojap-like ribosome-associated protein [Mycobacterium chubue...
189918Mycobacterium sp. KMS1 (0.04%)1E-391-1201-12016784120ref|YP_640692.1|Iojap-like protein [Mycobacterium sp. MCS] ref|YP_939586.1| ...
1299334Mycobacterium xenopi 40421 (0.04%)4E-361-1221-12215684122ref|WP_003921064.1|iojap family protein [Mycobacterium xenopi] gb|EID13565.1| i...
1214102Mycobacterium fortuitum subsp. fortuitum DSM 466211 (0.04%)1E-3224-12124-1211448498ref|WP_003879737.1|iojap family protein [Mycobacterium fortuitum] gb|EJZ05548.1...
710686Mycobacterium smegmatis JS6231 (0.04%)3E-361-1221-12215683122ref|YP_007293847.1|iojap-like ribosome-associated protein [Mycobacterium smegma...
875328Mycobacterium sp. JDM6011 (0.04%)2E-361-1281-12815782128ref|YP_004522742.1|hypothetical protein JDM601_1488 [Mycobacterium sp. JDM601] ...
1232724Mycobacterium indicus pranii MTCC 95061 (0.04%)4E-341-1301-13014982130ref|YP_006728831.1|hypothetical protein MIP_02551 [Mycobacterium indicus pranii...
1299331Mycobacterium intracellulare 19561 (0.04%)4E-341-1301-13014982130ref|YP_005337366.1|hypothetical protein OCU_18260 [Mycobacterium intracellulare...
561304Mycobacterium leprae Br49231 (0.04%)1E-331-1281-12914882129ref|NP_302025.1|hypothetical protein ML1453 [Mycobacterium leprae TN] ref|YP...






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