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Job 50762 [4r7s_2014-09-26_00000027_1_11] [2014-09-26] [131.152.x.x] [Structure] [Complete]

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!



Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    
 
GQSYEELIEKSYDFVDKGDLVSAEESLKAAMRKEPANPLNYALLTNLGTIQRRQGKLQEALISYTSALSGHTKNITILENRASLYTELGETEKALNDYNTLLIENPEHQEALYCRGLLYIQLQNYMWAEQDFDKILEVNEKSVRARLGHAILEKMRGNYDESERIFNYLISEMPRDWILYEGRADLYFMMGKNARAMADIEKVFTESEPTANLYVLRGKIKLAQYEKERAALDFKKAESMGYNKEVIKELLKLTMNN
tmhmm (0)
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low complexity (0%)
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coiled-coils (0%)
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disordered (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred
---HHHHHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.110
  max. Y    41	    0.106
  max. S    30	    0.113
  mean S     1-40   0.096
       D     1-40   0.101    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
  141     6.00     135,147  


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-257     alignment     1w3bA_302     1-388   0.5422   TRANSFERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
999421Parabacteroides merdae CL09T00C401 (0.06%)9E-481-25719-275196100257ref|WP_005634890.1|hypothetical protein [Parabacteroides] gb|EDN84946.1| tetrat...
997885Bacteroides ovatus CL02T12C041 (0.06%)2E-461-25318-27019238253ref|WP_004301105.1|hypothetical protein [Bacteroides] gb|EDO10214.1| tetratrico...
997873Bacteroides caccae CL03T12C611 (0.06%)5E-451-25318-27018738253ref|WP_005679664.1|hypothetical protein [Bacteroides] gb|EDM19065.1| tetratrico...
449673Bacteroides stercoris ATCC 431831 (0.06%)6E-471-25420-28119337262ref|WP_005654379.1|hypothetical protein [Bacteroides stercoris] gb|EDS15019.1| ...
471870Bacteroides intestinalis DSM 173931 (0.06%)6E-472-25321-27219436252ref|WP_007664505.1|hypothetical protein [Bacteroides intestinalis] gb|EDV04100....
423472Crocosphaera watsonii WH 00053 (0.17%)5E-697-257705-95226726251ref|WP_021832627.1|TPR domain protein [Crocosphaera watsonii] emb|CCQ55026.1| T...
1133568Brachyspira pilosicoli B29041 (0.06%)2E-4836-25293-30919926217ref|YP_006706986.1|hypothetical protein B2904_orf895 [Brachyspira pilosicoli B2...
203124Trichodesmium erythraeum IMS10159 (3.28%)2E-752-257288-54128825257ref|YP_722042.1|hypothetical protein Tery_2349 [Trichodesmium erythraeum IMS...
213618Microcystis aeruginosa PCC 79413 (0.17%)1E-713-255668-91627525253ref|WP_002774751.1|Tetratricopeptide repeat protein (fragment) [Microcystis aer...
575540Isosphaera pallida ATCC 436441 (0.06%)8E-656-252553-79625325247ref|YP_004177407.1|serine/threonine protein kinase [Isosphaera pallida ATCC 436...
497965Cyanothece sp. PCC 78226 (0.33%)6E-617-253404-65224025253ref|YP_003899606.1|Tetratricopeptide repeat-containing protein [Cyanothece sp. ...
536019Mesorhizobium opportunistum WSM20751 (0.06%)5E-5224-25452-27921025231ref|YP_004610427.1|TPR repeat-containing protein [Mesorhizobium opportunistum W...
32057Calothrix sp. PCC 71033 (0.17%)3E-764-257760-101029124254ref|WP_019496258.1|hypothetical protein [Calothrix sp. PCC 7103]
77133uncultured bacterium1 (0.06%)1E-632-252322-56924924251gb|EKD52197.1|peptidase C14 caspase catalytic subunit P20 [uncultured bact...
321332Synechococcus sp. JA-2-3B'a(2-13)1 (0.06%)3E-607-240298-52723824234ref|YP_477744.1|TPR repeat-containing protein kinase [Synechococcus sp. JA-2...
1287056Brachyspira hampsonii 305993 (0.17%)1E-564-25298-34322624249ref|WP_008730926.1|hypothetical protein [Brachyspira hampsonii] gb|ELV05024.1| ...
314231Fulvimarina pelagi HTCC25061 (0.06%)2E-5111-25451-29120924244ref|WP_007067899.1|GlcNAc transferase [Fulvimarina pelagi] gb|EAU41524.1| O-lin...
395492Rhizobium leguminosarum bv. trifolii WSM23041 (0.06%)3E-5021-25453-28320424234ref|YP_002282856.1|hypothetical protein Rleg2_3363 [Rhizobium leguminosarum bv....
366394Sinorhizobium medicae WSM4192 (0.11%)2E-4924-25464-29120224231ref|YP_001328419.1|hypothetical protein Smed_2754 [Sinorhizobium medicae WSM419...
395491Rhizobium leguminosarum bv. trifolii WSM13251 (0.06%)1E-4921-25453-28320224234ref|YP_002977447.1|hypothetical protein Rleg_3665 [Rhizobium leguminosarum bv. ...






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