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Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 .
	hhhhhhMGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRIFSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYRIVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)	XX---------------------------------------------------------------------------------------------------XXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX-XXXXXX
psipred	-HHHHHHHHHHHHH----HHHHHH----HHHHHHHH-------HHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    33	    0.115
  max. Y     3	    0.122
  max. S     1	    0.149
  mean S     1-2    0.137
       D     1-2    0.128    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.128 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-300	alignment	2grmA_302	1-315	0.8369	TRANSCRIPTION

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
930782	Listeria monocytogenes J1-220	3 (0.1%)	3E-44	1-300	1-300	185	100	300	ref|YP_012952.1|	transcriptional activator [Listeria monocytogenes serotype 4...
882020	Listeria monocytogenes SLCC2479	3 (0.1%)	3E-44	1-300	1-300	185	100	300	ref|NP_463855.1|	transcriptional regulator [Listeria monocytogenes EGD-e] ref...
1030009	Listeria monocytogenes M7	6 (0.2%)	8E-44	1-300	1-300	184	100	300	ref|YP_002351260.1|	transcriptional activator, Rgg/GadR/MutR family, C- domain p...
393130	Listeria monocytogenes J0161	2 (0.07%)	7E-44	1-300	1-300	184	99	300	ref|YP_005964297.1|	transcriptional activator [Listeria monocytogenes J0161] ref...
1002366	Listeria innocua ATCC 33091	4 (0.13%)	1E-43	1-300	1-300	183	99	300	ref|WP_003770258.1|	DNA-binding helix-turn-helix protein [Listeria innocua] gb|E...
1288295	Listeria monocytogenes 6179	3 (0.1%)	1E-43	1-300	1-300	183	99	300	ref|YP_007602543.1|	HTH-type transcriptional regulator rgg [Listeria monocytogen...
272626	Listeria innocua Clip11262	4 (0.13%)	2E-43	1-300	1-300	182	99	300	ref|NP_469695.1|	hypothetical protein lin0350 [Listeria innocua Clip11262] re...
882097	Listeria monocytogenes SLCC2376	6 (0.2%)	2E-43	1-300	1-300	182	98	300	ref|YP_006689499.1|	Rgg family transcriptional activator [Listeria monocytogenes...
1639	Listeria monocytogenes	17 (0.56%)	4E-44	1-300	1-300	185	97	300	ref|YP_005970161.1|	hypothetical protein [Listeria monocytogenes Finland 1998] r...
637381	Listeria monocytogenes 08-5923	3 (0.1%)	3E-44	1-300	1-300	185	96	300	ref|YP_003412480.1|	hypothetical protein LM5578_0362 [Listeria monocytogenes 08-...
879090	Listeria monocytogenes SLCC7179	3 (0.1%)	5E-44	1-300	1-300	184	96	300	ref|YP_006698005.1|	Rgg family transcriptional activator [Listeria monocytogenes...
1334565	Listeria monocytogenes EGD	5 (0.16%)	5E-44	1-300	1-300	184	96	300	ref|YP_005961469.1|	hypothetical protein [Listeria monocytogenes 10403S] ref|YP_...
1288293	Listeria monocytogenes QOC1	5 (0.16%)	8E-44	1-300	1-300	184	96	300	emb|CDK41412.1|	conserved hypothetical protein [Listeria monocytogenes QOC1]
1288294	Listeria monocytogenes QOC2	1 (0.03%)	8E-44	1-300	1-300	184	96	300	emb|CDK31541.1|	conserved hypothetical protein [Listeria monocytogenes QOC2]
702458	Listeria monocytogenes FSL F2-208	6 (0.2%)	8E-41	1-300	1-300	174	80	300	gb|EFR85891.1|	transcriptional activator, putative [Listeria monocytogenes ...
702456	Listeria innocua FSL S4-378	3 (0.1%)	3E-40	1-300	1-300	172	79	300	gb|EFR92003.1|	transcriptional activator, putative [Listeria innocua FSL S4...
702457	Listeria marthii FSL S4-120	4 (0.13%)	4E-37	1-294	1-291	161	55	294	gb|EFR88384.1|	transcriptional activator, putative [Listeria marthii FSL S4...
393124	Listeria monocytogenes FSL N3-165	4 (0.13%)	7E-29	1-250	1-247	134	54	250	ref|WP_003732959.1|	hypothetical protein [Listeria monocytogenes] gb|EEW14652.1|...
882094	Listeria monocytogenes L312	1 (0.03%)	5E-39	1-298	1-295	168	52	298	ref|YP_002757558.1|	transcriptional regulator [Listeria monocytogenes serotype 4...
393117	Listeria monocytogenes FSL J1-194	2 (0.07%)	2E-38	1-298	1-295	166	52	298	ref|WP_003727134.1|	hypothetical protein [Listeria monocytogenes] gb|EFG00886.1|...