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Fragment Libraries			Alanine Scanning			DNA Interface Scan
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Job 53133 [4u9w_2015-01-23_00000003_1_11] [2015-01-23] [131.152.x.x] [Structure] [Complete]

Full Structure Predictions

Model 1

Model 2

Model 3

Model 4

Model 5

Click the icons below each image to download the prediction in PDB format ( )

Images were produced using MolScript and Raster3D!

Features and Secondary Structure

1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200

GSMEERAAMDAVCAKVDAANRLGDPLEAFPVFKKYDRNGLNVSIECKRVSGLEPATVDWAFDLTKTNMQTMYEQSEWGWKDREKREEMTDDRAWYLIAWENSSVPVAFSHFRFDVECGDEVLYCYEVQLESKVRRKGLGKFLIQILQLMANSTQMKKVMLTVFKHNHGAYQFFREALQFEIDDSSPSMSGCCGEDCSYEILSRRTKF

tmhmm (0)
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low complexity (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

coiled-coils (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

disordered (9%)
XXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX------------------

psipred
--HHHHHHHHHHHHHHHHH---------------------EEEEEE-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH----EEEEEE----EEEEEEEEEEE------EEEEEEEEE-HHH----HHHHHHHHHHHHHHH----EEEEEEE---HHHHHHHHH----EE----------------EEEEEEE---

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    29	    0.139
  max. Y    19	    0.122
  max. S     3	    0.129
  mean S     1-18   0.109
       D     1-18   0.115    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.115 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction

Boundary STD (+/-) Consensus

-- -- --

Ginzu Domain Prediction 1

Domain Span Source Reference Parent Parent Span Confidence Annotations

1-207 alignment 4pv6A_303 1-154 0.706600 --

PSI-BLAST Sequence Hits (Top 20 by Identity) ALL DATA

TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)

E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description

9541 Macaca fascicularis 8 (0.2%) 8E-67 3-207 16-220 259 100 205 gb|EHH58267.1| N-alpha-acetyltransferase 40, NatD catalytic subunit, partia...

230844 Peromyscus maniculatus bairdii 1 (0.03%) 9E-67 3-207 16-220 259 100 205 ref|XP_006980805.1| PREDICTED: N-alpha-acetyltransferase 40 [Peromyscus manicula...

9755 Physeter catodon 1 (0.03%) 1E-66 3-207 16-220 258 100 205 ref|XP_007102648.1| PREDICTED: N-alpha-acetyltransferase 40 [Physeter catodon]

9544 Macaca mulatta 3 (0.08%) 1E-66 3-207 16-220 258 100 205 gb|EHH22748.1| N-alpha-acetyltransferase 40, NatD catalytic subunit, partia...

419612 Camelus ferus 2 (0.05%) 1E-66 3-207 32-236 258 100 205 gb|EPY86835.1| hypothetical protein CB1_000297009 [Camelus ferus]

9402 Pteropus alecto 1 (0.03%) 1E-66 3-207 16-220 258 100 205 ref|XP_003909685.1| PREDICTED: N-alpha-acetyltransferase 40 [Papio anubis] ref|X...

32630 synthetic construct 7 (0.18%) 2E-66 3-207 16-220 258 100 205 ref|NP_079047.2| N-alpha-acetyltransferase 40 [Homo sapiens] ref|XP_003274192...

9606 Homo sapiens 15 (0.38%) 2E-66 3-207 16-220 257 100 205 dbj|BAB14720.1| unnamed protein product [Homo sapiens] gb|ADZ48533.1| N-alph...

30538 Vicugna pacos 3 (0.08%) 7E-65 9-207 1-199 252 100 199 ref|XP_004437582.1| PREDICTED: N-alpha-acetyltransferase 40 isoform 1 [Ceratothe...

310752 Balaenoptera acutorostrata scammoni 1 (0.03%) 1E-64 9-207 1-199 252 100 199 ref|XP_007174401.1| PREDICTED: N-alpha-acetyltransferase 40 isoform X1 [Balaenop...

89462 Bubalus bubalis 1 (0.03%) 1E-69 3-207 202-406 268 99 205 ref|XP_006050958.1| PREDICTED: N-alpha-acetyltransferase 40 [Bubalus bubalis]

109478 Myotis brandtii 2 (0.05%) 1E-68 3-207 69-273 265 99 205 ref|XP_005864498.1| PREDICTED: N-alpha-acetyltransferase 40 [Myotis brandtii]

9796 Equus caballus 3 (0.08%) 6E-68 3-207 51-255 262 99 205 ref|XP_005598496.1| PREDICTED: N-alpha-acetyltransferase 40 [Equus caballus]

10029 Cricetulus griseus 5 (0.13%) 5E-67 3-207 86-290 259 99 205 gb|ERE77767.1| N-alpha-acetyltransferase 40, NatD catalytic subunit-like pr...

51337 Jaculus jaculus 3 (0.08%) 9E-67 3-207 16-220 259 99 205 ref|XP_004656642.1| PREDICTED: N-alpha-acetyltransferase 40 isoform X1 [Jaculus ...

246437 Tupaia chinensis 4 (0.1%) 2E-66 3-207 16-220 257 99 205 ref|XP_006149872.1| PREDICTED: N-alpha-acetyltransferase 40 [Tupaia chinensis]

9986 Oryctolagus cuniculus 4 (0.1%) 2E-66 3-207 16-220 257 99 205 ref|XP_002721078.1| PREDICTED: N-acetyltransferase 11 [Oryctolagus cuniculus]

9913 Bos taurus 3 (0.08%) 3E-66 3-207 16-220 257 99 205 ref|NP_001092474.1| N-alpha-acetyltransferase 40 [Bos taurus] gb|AAI42518.1| NAT...

34839 Chinchilla lanigera 2 (0.05%) 3E-66 3-207 16-220 257 99 205 ref|XP_005384712.1| PREDICTED: N-alpha-acetyltransferase 40 [Chinchilla lanigera...

9595 Gorilla gorilla gorilla 3 (0.08%) 3E-66 3-207 16-220 257 99 205 ref|XP_004051463.1| PREDICTED: N-alpha-acetyltransferase 40 [Gorilla gorilla gor...