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Job 55174 [2015-04-18_00000117_1_11] [2015-04-18] [131.152.x.x] [Structure] [Complete]

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!



Features and Secondary Structure  
 
        1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120 
 
mahhhhhhMLDHIGFNIADMKKSRAFYDAALSPLGIGHAMEFGDWVGYGRNGKPEFWIGAQKGAKLEGVLHVAFSAGTRSEVGRFYEAAIAAGGRDNGKPGLRPHYHPDYYAAFVLDPDGHNIEVVCHLPE
tmhmm (0)
        ---------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
        ---------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
        ---------------------------------------------------------------------------------------------------------------------------
disordered (1%)
        --------------------------------------------------------------------------------------------------------------------------X
psipred
        ---EEEEEE--HHHHHHHHHHHHHH---EEEEE---EEEE------EEEEE----------EEEEEE----HHHHHHHHHHHH---EE-------------EEEEEEE-----EEEEEE----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    32	    0.167
  max. Y    32	    0.147
  max. S    30	    0.263
  mean S     1-31   0.122
       D     1-31   0.138    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.138 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-123     alignment     4gymA_307     1-138   0.4397   OXIDOREDUCTASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
520454Brucella abortus bv. 6 str. 8701 (0.03%)1E-391-12312-134167100123ref|WP_002964969.1|glyoxalase [Brucella abortus] gb|EEP62544.1| lactoylglutathi...
1328345Brucella abortus 85-10581 (0.03%)8E-391-1231-123165100123ref|YP_222549.1|glyoxalase family protein [Brucella abortus bv. 1 str. 9-941...
520463Brucella pinnipedialis M163/99/101 (0.03%)2E-1276-1231-487810048ref|WP_006641117.1|glyoxalase/bleomycin resistance protein/dioxygenase, partial...
520449Brucella sp. 83/131 (0.03%)1E-391-12312-13416899123ref|NP_539082.1|lactoylglutathione lyase [Brucella melitensis bv. 1 str. 16M...
1293912Brucella ovis IntaBari-2009-88-34 (0.1%)8E-391-1231-12316599123ref|NP_698878.1|glyoxalase [Brucella suis 1330] ref|YP_001259724.1| glyoxala...
1169212Brucella abortus 67/931 (0.03%)2E-381-1231-12316499123ref|WP_006097141.1|hypothetical protein [Brucella abortus] gb|ENR76648.1| hypot...
520456Brucella neotomae 5K331 (0.03%)5E-3510-12321-13415299114ref|WP_004687678.1|glyoxalase [Brucella neotomae] gb|EEY03324.1| glyoxalase/ble...
520459Brucella ceti M644/93/12 (0.05%)5E-391-12312-13416698123ref|WP_006641899.1|glyoxalase [Brucella ceti] gb|EEX89386.1| glyoxalase/bleomyc...
1244532Brucella melitensis F15/06-73 (0.08%)2E-381-1231-12316498123ref|WP_005974306.1|hypothetical protein [Brucella melitensis] gb|ENQ92106.1| hy...
1160207Brucella abortus F6/05-31 (0.03%)1E-381-1231-12316498123ref|WP_002967964.1|glyoxalase [Brucella abortus] gb|EEX83320.1| glyoxalase/bleo...
1169233Brucella sp. F5/061 (0.03%)3E-381-1231-12316398123ref|YP_008839288.1|lactoylglutathione lyase [Brucella ceti TE10759-12] ref|YP_0...
520462Brucella pinnipedialis M292/94/12 (0.05%)4E-1763-1233-63939861ref|WP_006641637.1|glyoxalase [Brucella pinnipedialis] gb|EEZ29916.1| glyoxalas...
520461Brucella pinnipedialis B2/942 (0.05%)2E-1758-1231-66949766ref|WP_006641396.1|glyoxalase [Brucella pinnipedialis] gb|EEX99105.1| glyoxalas...
641118Ochrobactrum intermedium LMG 33011 (0.03%)1E-391-12328-15016790123ref|WP_006467969.1|glyoxalase [Ochrobactrum intermedium] gb|EEQ96866.1| glyoxal...
1234597Ochrobactrum intermedium M863 (0.08%)7E-391-1231-12316590123ref|WP_006470952.1|glyoxalase/bleomycin resistance protein/dioxygenase [Ochroba...
94625Ochrobactrum intermedium1 (0.03%)2E-371-1231-12416090124ref|WP_022568538.1|glyoxalase [Ochrobactrum intermedium] gb|ERM02237.1| glyoxal...
360313Ochrobactrum sp. CDB21 (0.03%)1E-391-1231-12316789123ref|WP_007872173.1|glyoxalase/bleomycin resistance protein/dioxygenase [Ochroba...
0UNIDENTIFIED94 (2.4%)4E-391-1231-12316689123ref|WP_021587474.1|glyoxalase [Ochrobactrum sp. EGD-AQ16] gb|ERI12865.1| glyoxa...
439375Ochrobactrum anthropi ATCC 491887 (0.18%)1E-381-1231-12316489123ref|YP_001369505.1|glyoxalase/bleomycin resistance protein/dioxygenase [Ochroba...
529Ochrobactrum anthropi3 (0.08%)1E-381-1231-12316489123ref|WP_010657571.1|glyoxalase [Ochrobactrum anthropi] gb|EXL03813.1| glyoxalase...






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