<cm_only/>
<realign_partial_threads/>
<frag_weight_aligned>0.1</frag_weight_aligned>
<nstruct>10</nstruct>
<sequence>NLYYFSYPLFVGFALLRLVAFHLGLLFVWLCQ</sequence>
<partial_threads>wt: 1
>query
---------------NLYYFSYPLFVGFALLRLVAFHLGLLFVWLCQ
>maestro_model1_HD_parallel.pdb
LVAFHLGLLFVWLCQNLYYFSYPLFVGFALLR---------------

ATOM    125  N   ASN A   1      -1.348  -0.928  28.853  1.00 58.12           N  
ATOM    126  CA  ASN A   1      -1.692  -2.235  28.275  1.00 58.12           C  
ATOM    127  C   ASN A   1      -2.232  -2.038  26.864  1.00 58.12           C  
ATOM    128  O   ASN A   1      -1.715  -2.586  25.893  1.00 58.12           O  
ATOM    129  CB  ASN A   1      -2.717  -3.021  29.133  1.00 58.12           C  
ATOM    133  N   LEU A   2      -3.260  -1.189  26.772  1.00 61.41           N  
ATOM    134  CA  LEU A   2      -3.983  -0.877  25.543  1.00 61.41           C  
ATOM    135  C   LEU A   2      -3.093  -0.094  24.564  1.00 61.41           C  
ATOM    136  O   LEU A   2      -3.207  -0.293  23.358  1.00 61.41           O  
ATOM    137  CB  LEU A   2      -5.261  -0.081  25.895  1.00 61.41           C  
ATOM    141  N   TYR A   3      -2.155   0.723  25.070  1.00 65.19           N  
ATOM    142  CA  TYR A   3      -1.176   1.450  24.254  1.00 65.19           C  
ATOM    143  C   TYR A   3      -0.210   0.478  23.549  1.00 65.19           C  
ATOM    144  O   TYR A   3       0.116   0.651  22.378  1.00 65.19           O  
ATOM    145  CB  TYR A   3      -0.387   2.440  25.141  1.00 65.19           C  
ATOM    153  N   TYR A   4       0.200  -0.590  24.243  1.00 66.56           N  
ATOM    154  CA  TYR A   4       1.137  -1.592  23.733  1.00 66.56           C  
ATOM    155  C   TYR A   4       0.434  -2.578  22.785  1.00 66.56           C  
ATOM    156  O   TYR A   4       1.107  -3.313  22.069  1.00 66.56           O  
ATOM    157  CB  TYR A   4       1.719  -2.383  24.924  1.00 66.56           C  
ATOM    165  N   PHE A   5      -0.905  -2.576  22.766  1.00 68.69           N  
ATOM    166  CA  PHE A   5      -1.735  -3.328  21.835  1.00 68.69           C  
ATOM    167  C   PHE A   5      -2.069  -2.455  20.610  1.00 68.69           C  
ATOM    168  O   PHE A   5      -2.004  -2.944  19.485  1.00 68.69           O  
ATOM    169  CB  PHE A   5      -3.035  -3.720  22.567  1.00 68.69           C  
ATOM    176  N   SER A   6      -2.377  -1.160  20.788  1.00 76.00           N  
ATOM    177  CA  SER A   6      -2.716  -0.260  19.689  1.00 76.00           C  
ATOM    178  C   SER A   6      -1.480   0.115  18.849  1.00 76.00           C  
ATOM    179  O   SER A   6      -1.585   0.162  17.625  1.00 76.00           O  
ATOM    180  CB  SER A   6      -3.424   0.992  20.253  1.00 76.00           C  
ATOM    182  N   TYR A   7      -0.315   0.332  19.482  1.00 78.06           N  
ATOM    183  CA  TYR A   7       0.996   0.582  18.867  1.00 78.06           C  
ATOM    184  C   TYR A   7       1.347  -0.322  17.654  1.00 78.06           C  
ATOM    185  O   TYR A   7       1.477   0.209  16.548  1.00 78.06           O  
ATOM    186  CB  TYR A   7       2.089   0.676  19.956  1.00 78.06           C  
ATOM    194  N   PRO A   8       1.427  -1.668  17.789  1.00 81.06           N  
ATOM    195  CA  PRO A   8       1.675  -2.560  16.649  1.00 81.06           C  
ATOM    196  C   PRO A   8       0.519  -2.633  15.634  1.00 81.06           C  
ATOM    197  O   PRO A   8       0.788  -2.806  14.448  1.00 81.06           O  
ATOM    198  CB  PRO A   8       1.988  -3.931  17.267  1.00 81.06           C  
ATOM    201  N   LEU A   9      -0.745  -2.457  16.048  1.00 81.12           N  
ATOM    202  CA  LEU A   9      -1.894  -2.433  15.132  1.00 81.12           C  
ATOM    203  C   LEU A   9      -1.915  -1.153  14.278  1.00 81.12           C  
ATOM    204  O   LEU A   9      -2.281  -1.204  13.104  1.00 81.12           O  
ATOM    205  CB  LEU A   9      -3.216  -2.529  15.925  1.00 81.12           C  
ATOM    209  N   PHE A  10      -1.472  -0.018  14.836  1.00 80.81           N  
ATOM    210  CA  PHE A  10      -1.294   1.258  14.141  1.00 80.81           C  
ATOM    211  C   PHE A  10      -0.249   1.131  13.016  1.00 80.81           C  
ATOM    212  O   PHE A  10      -0.510   1.537  11.884  1.00 80.81           O  
ATOM    213  CB  PHE A  10      -0.899   2.335  15.176  1.00 80.81           C  
ATOM    220  N   VAL A  11       0.891   0.483  13.305  1.00 84.44           N  
ATOM    221  CA  VAL A  11       1.916   0.124  12.322  1.00 84.44           C  
ATOM    222  C   VAL A  11       1.364  -0.929  11.332  1.00 84.44           C  
ATOM    223  O   VAL A  11       1.580  -0.820  10.127  1.00 84.44           O  
ATOM    224  CB  VAL A  11       3.186  -0.376  13.070  1.00 84.44           C  
ATOM    227  N   GLY A  12       0.593  -1.906  11.823  1.00 86.19           N  
ATOM    228  CA  GLY A  12      -0.074  -2.941  11.042  1.00 86.19           C  
ATOM    229  C   GLY A  12      -0.981  -2.368   9.949  1.00 86.19           C  
ATOM    230  O   GLY A  12      -0.759  -2.633   8.771  1.00 86.19           O  
ATOM    231  N   PHE A  13      -1.945  -1.511  10.306  1.00 86.38           N  
ATOM    232  CA  PHE A  13      -2.879  -0.882   9.364  1.00 86.38           C  
ATOM    233  C   PHE A  13      -2.241   0.243   8.517  1.00 86.38           C  
ATOM    234  O   PHE A  13      -2.859   0.710   7.552  1.00 86.38           O  
ATOM    235  CB  PHE A  13      -4.099  -0.333  10.134  1.00 86.38           C  
ATOM    242  N   ALA A  14      -0.998   0.651   8.812  1.00 84.75           N  
ATOM    243  CA  ALA A  14      -0.190   1.509   7.946  1.00 84.75           C  
ATOM    244  C   ALA A  14       0.429   0.694   6.792  1.00 84.75           C  
ATOM    245  O   ALA A  14       0.676   1.259   5.730  1.00 84.75           O  
ATOM    246  CB  ALA A  14       0.944   2.153   8.759  1.00 84.75           C  
ATOM    247  N   LEU A  15       0.626  -0.619   6.975  1.00 89.19           N  
ATOM    248  CA  LEU A  15       1.186  -1.532   5.978  1.00 89.19           C  
ATOM    249  C   LEU A  15       0.074  -2.346   5.285  1.00 89.19           C  
ATOM    250  O   LEU A  15       0.048  -2.433   4.061  1.00 89.19           O  
ATOM    251  CB  LEU A  15       2.134  -2.523   6.698  1.00 89.19           C  
ATOM    255  N   LEU A  16      -0.844  -2.938   6.064  1.00 89.12           N  
ATOM    256  CA  LEU A  16      -1.827  -3.950   5.654  1.00 89.12           C  
ATOM    257  C   LEU A  16      -2.892  -3.410   4.683  1.00 89.12           C  
ATOM    258  O   LEU A  16      -3.388  -4.138   3.825  1.00 89.12           O  
ATOM    259  CB  LEU A  16      -2.484  -4.491   6.950  1.00 89.12           C  
ATOM    263  N   ARG A  17      -3.246  -2.128   4.804  1.00 86.88           N  
ATOM    264  CA  ARG A  17      -4.142  -1.403   3.906  1.00 86.88           C  
ATOM    265  C   ARG A  17      -5.627  -1.728   4.193  1.00 86.88           C  
ATOM    266  O   ARG A  17      -6.415  -0.837   4.515  1.00 86.88           O  
ATOM    267  CB  ARG A  17      -3.864   0.103   4.103  1.00 86.88           C  
TER
END

wt: 1
>query
NLYYFSYPLFVGFALLRLVAFHLGLLFVWLCQ
>maestro_model1_HD.pdb
-LYYFSYPLFVGFALLRLVAFHLGLLFVWLC-

ATOM      1  N   LEU A   2     -20.364  -9.977   2.258  1.00 61.41           N  
ATOM      2  CA  LEU A   2     -19.774  -8.682   2.628  1.00 61.41           C  
ATOM      3  C   LEU A   2     -18.335  -8.578   2.102  1.00 61.41           C  
ATOM      4  O   LEU A   2     -17.827  -7.488   1.856  1.00 61.41           O  
ATOM      5  CB  LEU A   2     -19.837  -8.500   4.164  1.00 61.41           C  
ATOM      9  N   TYR A   3     -17.713  -9.749   1.932  1.00 65.19           N  
ATOM     10  CA  TYR A   3     -16.308 -10.023   1.603  1.00 65.19           C  
ATOM     11  C   TYR A   3     -15.725  -9.127   0.494  1.00 65.19           C  
ATOM     12  O   TYR A   3     -14.635  -8.575   0.621  1.00 65.19           O  
ATOM     13  CB  TYR A   3     -16.170 -11.530   1.297  1.00 65.19           C  
ATOM     21  N   TYR A   4     -16.497  -8.928  -0.578  1.00 66.56           N  
ATOM     22  CA  TYR A   4     -16.099  -8.173  -1.765  1.00 66.56           C  
ATOM     23  C   TYR A   4     -16.263  -6.651  -1.583  1.00 66.56           C  
ATOM     24  O   TYR A   4     -15.838  -5.900  -2.455  1.00 66.56           O  
ATOM     25  CB  TYR A   4     -16.990  -8.628  -2.940  1.00 66.56           C  
ATOM     33  N   PHE A   5     -16.857  -6.193  -0.471  1.00 68.69           N  
ATOM     34  CA  PHE A   5     -16.963  -4.785  -0.083  1.00 68.69           C  
ATOM     35  C   PHE A   5     -15.941  -4.483   1.028  1.00 68.69           C  
ATOM     36  O   PHE A   5     -15.299  -3.434   1.000  1.00 68.69           O  
ATOM     37  CB  PHE A   5     -18.396  -4.516   0.428  1.00 68.69           C  
ATOM     44  N   SER A   6     -15.710  -5.413   1.966  1.00 76.00           N  
ATOM     45  CA  SER A   6     -14.684  -5.267   2.994  1.00 76.00           C  
ATOM     46  C   SER A   6     -13.256  -5.434   2.427  1.00 76.00           C  
ATOM     47  O   SER A   6     -12.355  -4.730   2.882  1.00 76.00           O  
ATOM     48  CB  SER A   6     -14.996  -6.240   4.149  1.00 76.00           C  
ATOM     50  N   TYR A   7     -13.044  -6.282   1.404  1.00 78.06           N  
ATOM     51  CA  TYR A   7     -11.811  -6.379   0.602  1.00 78.06           C  
ATOM     52  C   TYR A   7     -11.247  -5.019   0.105  1.00 78.06           C  
ATOM     53  O   TYR A   7     -10.165  -4.647   0.560  1.00 78.06           O  
ATOM     54  CB  TYR A   7     -11.930  -7.460  -0.503  1.00 78.06           C  
ATOM     62  N   PRO A   8     -11.940  -4.234  -0.755  1.00 81.06           N  
ATOM     63  CA  PRO A   8     -11.448  -2.926  -1.216  1.00 81.06           C  
ATOM     64  C   PRO A   8     -11.267  -1.870  -0.109  1.00 81.06           C  
ATOM     65  O   PRO A   8     -10.324  -1.083  -0.186  1.00 81.06           O  
ATOM     66  CB  PRO A   8     -12.409  -2.480  -2.327  1.00 81.06           C  
ATOM     69  N   LEU A   9     -12.088  -1.888   0.953  1.00 81.12           N  
ATOM     70  CA  LEU A   9     -11.880  -1.045   2.135  1.00 81.12           C  
ATOM     71  C   LEU A   9     -10.591  -1.439   2.884  1.00 81.12           C  
ATOM     72  O   LEU A   9      -9.797  -0.571   3.247  1.00 81.12           O  
ATOM     73  CB  LEU A   9     -13.096  -1.149   3.082  1.00 81.12           C  
ATOM     77  N   PHE A  10     -10.338  -2.745   3.051  1.00 80.81           N  
ATOM     78  CA  PHE A  10      -9.105  -3.293   3.618  1.00 80.81           C  
ATOM     79  C   PHE A  10      -7.884  -2.936   2.751  1.00 80.81           C  
ATOM     80  O   PHE A  10      -6.874  -2.499   3.299  1.00 80.81           O  
ATOM     81  CB  PHE A  10      -9.241  -4.820   3.808  1.00 80.81           C  
ATOM     88  N   VAL A  11      -7.986  -3.045   1.415  1.00 84.44           N  
ATOM     89  CA  VAL A  11      -6.971  -2.597   0.454  1.00 84.44           C  
ATOM     90  C   VAL A  11      -6.662  -1.090   0.602  1.00 84.44           C  
ATOM     91  O   VAL A  11      -5.495  -0.708   0.543  1.00 84.44           O  
ATOM     92  CB  VAL A  11      -7.357  -3.011  -0.994  1.00 84.44           C  
ATOM     95  N   GLY A  12      -7.667  -0.249   0.880  1.00 86.19           N  
ATOM     96  CA  GLY A  12      -7.505   1.173   1.189  1.00 86.19           C  
ATOM     97  C   GLY A  12      -6.641   1.413   2.436  1.00 86.19           C  
ATOM     98  O   GLY A  12      -5.661   2.158   2.384  1.00 86.19           O  
ATOM     99  N   PHE A  13      -6.931   0.701   3.533  1.00 86.38           N  
ATOM    100  CA  PHE A  13      -6.144   0.745   4.770  1.00 86.38           C  
ATOM    101  C   PHE A  13      -4.770   0.059   4.632  1.00 86.38           C  
ATOM    102  O   PHE A  13      -3.867   0.321   5.429  1.00 86.38           O  
ATOM    103  CB  PHE A  13      -6.921   0.045   5.904  1.00 86.38           C  
ATOM    110  N   ALA A  14      -4.606  -0.817   3.635  1.00 84.75           N  
ATOM    111  CA  ALA A  14      -3.379  -1.538   3.330  1.00 84.75           C  
ATOM    112  C   ALA A  14      -2.449  -0.676   2.466  1.00 84.75           C  
ATOM    113  O   ALA A  14      -1.248  -0.664   2.719  1.00 84.75           O  
ATOM    114  CB  ALA A  14      -3.730  -2.804   2.540  1.00 84.75           C  
ATOM    115  N   LEU A  15      -3.001   0.079   1.503  1.00 89.19           N  
ATOM    116  CA  LEU A  15      -2.328   1.113   0.708  1.00 89.19           C  
ATOM    117  C   LEU A  15      -1.741   2.201   1.615  1.00 89.19           C  
ATOM    118  O   LEU A  15      -0.556   2.513   1.529  1.00 89.19           O  
ATOM    119  CB  LEU A  15      -3.333   1.741  -0.288  1.00 89.19           C  
ATOM    123  N   LEU A  16      -2.558   2.679   2.563  1.00 89.12           N  
ATOM    124  CA  LEU A  16      -2.241   3.667   3.598  1.00 89.12           C  
ATOM    125  C   LEU A  16      -1.125   3.211   4.571  1.00 89.12           C  
ATOM    126  O   LEU A  16      -0.657   3.998   5.391  1.00 89.12           O  
ATOM    127  CB  LEU A  16      -3.571   3.950   4.345  1.00 89.12           C  
ATOM    131  N   ARG A  17      -0.701   1.941   4.505  1.00 86.88           N  
ATOM    132  CA  ARG A  17       0.309   1.327   5.365  1.00 86.88           C  
ATOM    133  C   ARG A  17       1.394   0.582   4.566  1.00 86.88           C  
ATOM    134  O   ARG A  17       2.259  -0.052   5.172  1.00 86.88           O  
ATOM    135  CB  ARG A  17      -0.392   0.434   6.412  1.00 86.88           C  
ATOM    142  N   LEU A  18       1.341   0.634   3.228  1.00 89.56           N  
ATOM    143  CA  LEU A  18       2.235   0.035   2.235  1.00 89.56           C  
ATOM    144  C   LEU A  18       2.249  -1.505   2.275  1.00 89.56           C  
ATOM    145  O   LEU A  18       1.723  -2.155   1.378  1.00 89.56           O  
ATOM    146  CB  LEU A  18       3.654   0.660   2.289  1.00 89.56           C  
ATOM    150  N   VAL A  19       2.875  -2.080   3.309  1.00 91.06           N  
ATOM    151  CA  VAL A  19       3.338  -3.468   3.427  1.00 91.06           C  
ATOM    152  C   VAL A  19       2.227  -4.523   3.217  1.00 91.06           C  
ATOM    153  O   VAL A  19       2.483  -5.627   2.740  1.00 91.06           O  
ATOM    154  CB  VAL A  19       4.053  -3.628   4.804  1.00 91.06           C  
ATOM    157  N   ALA A  20       0.978  -4.183   3.551  1.00 89.62           N  
ATOM    158  CA  ALA A  20      -0.167  -5.071   3.395  1.00 89.62           C  
ATOM    159  C   ALA A  20      -0.762  -5.008   1.975  1.00 89.62           C  
ATOM    160  O   ALA A  20      -1.523  -5.901   1.604  1.00 89.62           O  
ATOM    161  CB  ALA A  20      -1.244  -4.639   4.401  1.00 89.62           C  
ATOM    162  N   PHE A  21      -0.436  -3.987   1.164  1.00 90.44           N  
ATOM    163  CA  PHE A  21      -0.962  -3.811  -0.197  1.00 90.44           C  
ATOM    164  C   PHE A  21      -0.494  -4.949  -1.118  1.00 90.44           C  
ATOM    165  O   PHE A  21      -1.249  -5.400  -1.975  1.00 90.44           O  
ATOM    166  CB  PHE A  21      -0.524  -2.443  -0.769  1.00 90.44           C  
ATOM    173  N   HIS A  22       0.707  -5.487  -0.874  1.00 90.81           N  
ATOM    174  CA  HIS A  22       1.274  -6.637  -1.577  1.00 90.81           C  
ATOM    175  C   HIS A  22       0.416  -7.904  -1.398  1.00 90.81           C  
ATOM    176  O   HIS A  22       0.273  -8.678  -2.340  1.00 90.81           O  
ATOM    177  CB  HIS A  22       2.723  -6.873  -1.099  1.00 90.81           C  
ATOM    183  N   LEU A  23      -0.232  -8.071  -0.235  1.00 91.00           N  
ATOM    184  CA  LEU A  23      -1.171  -9.164   0.040  1.00 91.00           C  
ATOM    185  C   LEU A  23      -2.533  -8.879  -0.624  1.00 91.00           C  
ATOM    186  O   LEU A  23      -3.202  -9.796  -1.098  1.00 91.00           O  
ATOM    187  CB  LEU A  23      -1.389  -9.288   1.566  1.00 91.00           C  
ATOM    191  N   GLY A  24      -2.911  -7.597  -0.718  1.00 88.50           N  
ATOM    192  CA  GLY A  24      -4.079  -7.117  -1.451  1.00 88.50           C  
ATOM    193  C   GLY A  24      -3.975  -7.385  -2.957  1.00 88.50           C  
ATOM    194  O   GLY A  24      -4.950  -7.824  -3.562  1.00 88.50           O  
ATOM    195  N   LEU A  25      -2.784  -7.191  -3.538  1.00 90.44           N  
ATOM    196  CA  LEU A  25      -2.455  -7.514  -4.928  1.00 90.44           C  
ATOM    197  C   LEU A  25      -2.335  -9.033  -5.146  1.00 90.44           C  
ATOM    198  O   LEU A  25      -2.728  -9.531  -6.201  1.00 90.44           O  
ATOM    199  CB  LEU A  25      -1.102  -6.868  -5.302  1.00 90.44           C  
ATOM    203  N   LEU A  26      -1.837  -9.780  -4.148  1.00 90.50           N  
ATOM    204  CA  LEU A  26      -1.716 -11.242  -4.196  1.00 90.50           C  
ATOM    205  C   LEU A  26      -3.097 -11.920  -4.290  1.00 90.50           C  
ATOM    206  O   LEU A  26      -3.228 -12.954  -4.939  1.00 90.50           O  
ATOM    207  CB  LEU A  26      -0.932 -11.745  -2.962  1.00 90.50           C  
ATOM    211  N   PHE A  27      -4.139 -11.304  -3.714  1.00 89.81           N  
ATOM    212  CA  PHE A  27      -5.536 -11.722  -3.844  1.00 89.81           C  
ATOM    213  C   PHE A  27      -6.022 -11.626  -5.307  1.00 89.81           C  
ATOM    214  O   PHE A  27      -6.663 -12.553  -5.796  1.00 89.81           O  
ATOM    215  CB  PHE A  27      -6.406 -10.854  -2.911  1.00 89.81           C  
ATOM    222  N   VAL A  28      -5.660 -10.554  -6.033  1.00 87.06           N  
ATOM    223  CA  VAL A  28      -6.003 -10.357  -7.447  1.00 87.06           C  
ATOM    224  C   VAL A  28      -5.287 -11.410  -8.315  1.00 87.06           C  
ATOM    225  O   VAL A  28      -5.897 -11.980  -9.215  1.00 87.06           O  
ATOM    226  CB  VAL A  28      -5.624  -8.920  -7.914  1.00 87.06           C  
ATOM    229  N   TRP A  29      -4.017 -11.699  -7.998  1.00 87.75           N  
ATOM    230  CA  TRP A  29      -3.203 -12.741  -8.628  1.00 87.75           C  
ATOM    231  C   TRP A  29      -3.781 -14.151  -8.388  1.00 87.75           C  
ATOM    232  O   TRP A  29      -3.772 -14.979  -9.294  1.00 87.75           O  
ATOM    233  CB  TRP A  29      -1.765 -12.614  -8.080  1.00 87.75           C  
ATOM    243  N   LEU A  30      -4.315 -14.411  -7.186  1.00 87.31           N  
ATOM    244  CA  LEU A  30      -4.935 -15.682  -6.806  1.00 87.31           C  
ATOM    245  C   LEU A  30      -6.324 -15.852  -7.458  1.00 87.31           C  
ATOM    246  O   LEU A  30      -6.756 -16.977  -7.703  1.00 87.31           O  
ATOM    247  CB  LEU A  30      -5.058 -15.700  -5.262  1.00 87.31           C  
ATOM    251  N   CYS A  31      -7.012 -14.745  -7.764  1.00 84.31           N  
ATOM    252  CA  CYS A  31      -8.267 -14.723  -8.508  1.00 84.31           C  
ATOM    253  C   CYS A  31      -7.981 -14.751 -10.019  1.00 84.31           C  
ATOM    254  O   CYS A  31      -8.852 -14.630 -10.881  1.00 84.31           O  
ATOM    255  CB  CYS A  31      -9.028 -13.418  -8.193  1.00 84.31           C  
TER
END</partial_threads>