SSGCID - LpboA.00107.a Membrane efflux protein Domain 2 Parse 1 Confidence: 0.85

Job ID	Status	Method	Username	Target	Length	Date (PST)	Expiration Date (PST)
2694	Domain complete	Structure prediction	ssgcid	SSGCID - LpboA.00107.a Me...	476	9 Apr 2019	-
Domain ID	Domain	Parse	Confidence	Modeling Method	Model Span	Length	Date (PST)
2894	2	1	0.85	comparative modeling	178-476	299	12 Apr 2019
Cluster 1 Templates
GREMLIN (Neff(80%)/√Len: 131.1)
Alignment
>2894
AGAVSETELKSVETSLNSAEISLFKAEKNLASLKMGYRPEDLNKANIQIPKNKSELKEAYIKLNTMIENAELDMAEANFKSTLKNMESTQLLLKESNIKSPLSGTVASRIKEQGEAVKGGEALYIVVDTSKVILKFNIGESELWKLKKDQKVNFIVDAYPGQNFEGKVYIISPIVDPQSRTVEVKVIAQNEKKLLKPGMFTRGYILLEEARKKTFLIPLKALIKNKEGKSGTVFVANEENRLFSVEVEIIKEESGFVEVLGNLELGRYIAISDLNELKEGQKVKIPKEQTPSLIEEKSY
>5ng5A_102 weight: 0.1250 score: 222.3 eval: 4.1e-07 prob: n/a identity: 0.1572 startpos: 65
-----QATYDSAKGDLAKAQAAANIAQLTVNRY------QKLLGTQYISKQEYDQALA------------DAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVqqATALATVQQLDPIYVDVTQSSNDMMRLK-kAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTMMPGMFVRARLEEGL-NPNAILVPQQGVTRTP-RGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQE------------
>5ng5A_w008 weight: 0.1138 score: 0.08994 eval: n/a prob: n/a identity: 0.1706 startpos: 64
-----------YQATYDSAKGDLAKAQLTVN------RYQKLLGTQYISKQEYD-------QAL-----ADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQALATVQQLDPIYVDVTQSSNDMMRLNGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTMMPGMFVRARLEE-GLNPNAILVPQQGVTRTPRGD-ATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKA--------------
>5ng5A_302 weight: 0.1099 score: 20.05 eval: n/a prob: n/a identity: 0.1672 startpos: 60
DPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLL------GTQYIS------------KQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNgtALATVQQLDPIYVDVTQSSNDMMRLkgKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTMMPGMFVRARLEEG-LNPNAILVPQQGV-TRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQE------------
>5v5sD_w000 weight: 0.0831 score: 0.00450 eval: n/a prob: n/a identity: 0.1672 startpos: 64
-----------YQATYDSAKGDLAIAQLTVN------RYQKLLGTQYISKQEYD-------QAL-----ADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATATVQQLDPIYVDVTQSSNDFLRLNGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGCITLRAIFPNPDHTLLPGMFVRARLEE-GLNPNAILVPQQGVTRTPRGDA-TVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKA--------------
>4dk0A_w001 weight: 0.0798 score: 0.01130 eval: n/a prob: n/a identity: 0.1806 startpos: 57
----------IDSTTQINTLNTRKAALASYQ------RLSKLYGQKATSLDTLN-------TAKLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISVYYYANIIVENPEHVLRIGMTTENNIKI-ADVQNVLFIPNL------AVQQDKYVVN-VLNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVISQ--------------------------
>4kkuB_w002 weight: 0.0763 score: 0.01982 eval: n/a prob: n/a identity: 0.1572 startpos: 14
----------ILSDYLSLNGDVDTKVKADIFPDAVGKISLRIKLGAVQKGQIVATLDPLKSPVR-----------------------------------APISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIGSNLKLIIGMFSKIKLI-TKRFKDVIKISREAVVER--EGKKFVFKVDLSKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINL--------------
>4kktC_w001 weight: 0.0749 score: 0.01563 eval: n/a prob: n/a identity: 0.1472 startpos: 13
----------ILSDYLSLNGDVDTKVKADIFPDAVGKISLRIKLGAVQKGQIVA---TLDPVRA-----------------------------------PIS-GYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIGSNLKLIIGMFSKIKLI-TKRFKDVIKISREAVVER--EGKKFVFKVDLSKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINL--------------
>4kktD_w001 weight: 0.0749 score: 0.01575 eval: n/a prob: n/a identity: 0.1472 startpos: 14
----------ILSDYLSLNGDVDTKVKADIFPDAVGKISLRIKLGAVQKGQIVA---TLSPVRA-----------------------------------PIS-GYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIGSNLKLIIGMFSKIKLI-TKRFKDVIKISREAVVER--EGKKFVFKVDLSKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINL--------------
>4kksA_w002 weight: 0.0725 score: 0.01952 eval: n/a prob: n/a identity: 0.1405 startpos: 22
----------LNGDVDTKVK-----ADIFPDAVGKITSLRIKLGAYVQKGQIVASVYLKSPVRA-----------------------------------PISG-YILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIGSNLKLIIGMFSKIKLIT-KRFKDVIKISREAVVER--EGKKFVFKVDLSKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINL--------------
>4dk1A_w000 weight: 0.0698 score: 0.00096 eval: n/a prob: n/a identity: 0.1672 startpos: 60
-----------YEADYQSAQANLASTQEQAQ------RYKLLVADQAVSKQQYA-------DAN------------AAYLQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISVYYYANIIVENPEHVLRIGMTTENNIKI-ADVQNVLFIPN----------------------L--AVQEIGVQNDFQTEVKSGLTEGEKVV-----------------------------
>4dk0A_203 weight: 0.0663 score: 326.73 eval: 1.4e-45 prob: 100 identity: 0.1973 startpos: 67
--NTRKAALASYQAQLVARKTAYDVALSNYQ------R-lkLYGQKATSLDTLNTAKATLNNA-----KAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTvqTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISdyYYANIIVENPEHVLRIGMTTENNIKI-ADVQNVLFIPNLAVQQD--K--YVVNVL-NTT--QEREIEIGVQNDFQTEVKSGLTEGEKVVISQ--------------------------
>4kktD_303 weight: 0.0039 score: 19.56 eval: n/a prob: n/a identity: 0.1672 startpos: 1
----------------------------------YRFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPisNLDKLIIGMF--SKIKLikRFKDVIKISREAVVEREG--KKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kkuB_304 weight: 0.0038 score: 19.54 eval: n/a prob: n/a identity: 0.1639 startpos: 1
------------------------------YRFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLDPLKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPisNLDKLIIGMF--SKIKLikRFKDVIKISREAVVEREG--KKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kkuC_106 weight: 0.0038 score: 199.2 eval: 2.3e-06 prob: n/a identity: 0.1438 startpos: 56
--------------IVATL--------------------------------------------------------------------------DKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIgnLDKLIIGMFSKIKLITKR-FKDVIKISREAVVERE--GKKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEG------i-
>4kktB_109 weight: 0.0037 score: 195.3 eval: 3e-06 prob: n/a identity: 0.1505 startpos: 38
VGKITSLRIK----------------------------------LGAYVQK---------------------------------------qIVATLPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIgnLDKLIIGMFSKIKLITKR-FKDVIKISREAVVERE--GKKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEG------i-
>4kktD_108 weight: 0.0037 score: 195.8 eval: 2.9e-06 prob: n/a identity: 0.1572 startpos: 38
VGKITSLRIK----------------------------------LGAYVQK-------------------------------------GQIVATLSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIgnLDKLIIGMFSKIKLITKR-FKDVIKISREAVVERE--GKKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEG------i-
>4kkuB_110 weight: 0.0037 score: 191.3 eval: 4.1e-06 prob: n/a identity: 0.1438 startpos: 65
----------------------------------------------------------------------------------------------KSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIgnLDKLIIGMFSKIKLITKR-FKDVIKISREAVVERE--GKKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEG------i-
>4kksA_107 weight: 0.0036 score: 196.7 eval: 2.7e-06 prob: n/a identity: 0.1438 startpos: 65
SRPG--------------------------------------------------------------------------------------SVYLKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPIgnLDKLIIGMFSKIKLITKR-FKDVIKISREAVVERE--GKKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEG------i-
>4kksA_305 weight: 0.0036 score: 19.5 eval: n/a prob: n/a identity: 0.1739 startpos: 1
----------------------SYRFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLDPSRPGSVYLKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPisNLDKLIIGMF--SKIKLikRFKDVIKISREAVVEREG--KKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kkuA_204 weight: 0.0035 score: 298.49 eval: 2.2e-39 prob: 100 identity: 0.1538 startpos: 59
------------------------------------------------------------------------------------------ATLDpsPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLtiGSNLDKLIIGMFSKIKLIT-KRFKDVIKISREAVVER--EGKKFVFKVDLEssVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kkuC_306 weight: 0.0035 score: 19.49 eval: n/a prob: n/a identity: 0.1639 startpos: 1
---------------------------------RFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLDKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPisNLDKLIIGMF--SKIKLikRFKDVIKISREAVVEREG--KKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kktB_307 weight: 0.0034 score: 19.38 eval: n/a prob: n/a identity: 0.1672 startpos: 1
-----------------------------------YRFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPisNLDKLIIGMF--SKIKLikRFKDVIKISREAVVEREG--KKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kktC_207 weight: 0.0034 score: 283.37 eval: 2.8e-37 prob: 100 identity: 0.1505 startpos: 58
------------------------------------------------------------------------------------------ATLDPV--RAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLtiGSNLDKLIIGMFSKIKLIT-KRFKDVIKISREAVVER--EGKKFVFKVDLEssVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kktC_308 weight: 0.0034 score: 18.89 eval: n/a prob: n/a identity: 0.1639 startpos: 1
-----------------------------------RFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDAVGKITSLRIKLGAYVQKGQIVATLDPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLTPisNLDKLIIGMF--SKIKLikRFKDVIKISREAVVEREG--KKFVFKVDlsKSVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>4kksA_206 weight: 0.0033 score: 293.27 eval: 2.1e-38 prob: 100 identity: 0.1505 startpos: 69
------------------------------------------------------------------------------------------SVYLKSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDSKSRTIEVYLtiGSNLDKLIIGMFSKIKLIT-KRFKDVIKISREAVVER--EGKKFVFKVDLEssVQMLPITVLFEIDNIVALSGEVEENDLIVVEGMSALSNGSLINLVDTKEGLSAESNI-
>5v5sD_205 weight: 0.0033 score: 303.11 eval: 8.6e-42 prob: 100 identity: 0.1639 startpos: 63
---TYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQA------------------LADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGqaLATVQQLDPIYVDVTQSSNDFLRLKQELavSLITSDGIKFPQDGTLEFSDVTVDQTTGCITLRAIFPNPDHTLLPGMFVRARLEE-GLNPNAILVPQQGVTRTP-RGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQE------------
Alignment cluster 1 [ RosettaCM constraints ]