SSGCID - LpboA.00107.a Membrane efflux protein Domain 2 Parse 1 Confidence: 0.85

Job ID	Status	Method	Username	Target	Length	Date (PST)	Expiration Date (PST)
2694	Domain complete	Structure prediction	ssgcid	SSGCID - LpboA.00107.a Me...	476	9 Apr 2019	-

Domain ID	Domain	Parse	Confidence	Modeling Method	Model Span	Length	Date (PST)
2894	2	1	0.85	comparative modeling	178-476	299	12 Apr 2019

Cluster 3 Templates

GREMLIN (Neff(80%)/√Len: 131.1)

Alignment

>2894
AGAVSETELKSVETSLNSAEISLFKAEKNLASLKMGYRPEDLNKANIQIPKNKSELKEAYIKLNTMIENAELDMAEANFKSTLKNMESTQLLLKESNIKSPLSGTVASRIKEQGEAVKGGEALYIVVDTSKVILKFNIGESELWKLKKDQKVNFIVDAYPGQNFEGKVYIISPIVDPQSRTVEVKVIAQNEKKLLKPGMFTRGYILLEEARKKTFLIPLKALIKNKEGKSGTVFVANEENRLFSVEVEIIKEESGFVEVLGNLELGRYIAISDLNELKEGQKVKIPKEQTPSLIEEKSY
>3ne5B_301 weight: 0.3576 score: 20.4 eval: n/a prob: n/a identity: 0.1538 startpos: 24
GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTptIPDWVEAQSEYLLLREtgTATQTEGILERLRldIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTAS--EPMLLIPSQALIDTGS--EQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMRS-------
>3ne5B_103 weight: 0.3258 score: 221.3 eval: 4.4e-07 prob: n/a identity: 0.1438 startpos: 80
---------------WVEAQSEYLLLRETG-----------------GTATQTEGILERLRLAG-------------MPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTA--SEPMLLIPSQALIDTG--SEQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMR--------
>3ne5B_w001 weight: 0.2880 score: 0.01039 eval: n/a prob: n/a identity: 0.1371 startpos: 64
----------DKVQKGTPLLDLTIPDWVEAQ------SEYLLRETGGTQTEGIL-------ERL---------RLAGMPEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNT--ASEPMLLIPSQALI-DTGS-EQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVS--SGLFLIDSEANI--------------
>3t51B_104 weight: 0.0151 score: 207.3 eval: 1.3e-06 prob: n/a identity: 0.1438 startpos: 80
---------------WVEAQSEYLLLRET-----------------GGTATQTEGILERLRLAGM-------------PEADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTA--SEPMLLIPSQALIDTG--SEQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMR--------
>3t51B_310 weight: 0.0136 score: 18.67 eval: n/a prob: n/a identity: 0.1538 startpos: 65
KVQKGTPLLDLTIPDWVEAQSEYLLLRET-----------------GGTATQTEGILERLRLAGMP-------------EADIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQL--NTASEPMLLIPSQALIDTGS--EQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANISGALERMRS-------

Alignment cluster 3 [ RosettaCM constraints ]