SSGCID - MygeA.20063.a Oligopeptide transport system permease protein OppB MG

SSGCID - MygeA.20063.a Oligopeptide transport system permease protein OppB MG_077 Domain 1 Parse 1 Confidence: 0.63

Job ID	Status	Method	Username	Target	Length	Date (PST)	Expiration Date (PST)
14008	Domain complete	Structure prediction	ssgcid	SSGCID - MygeA.20063.a Ol...	407	15 Jan 2020	-

Domain ID	Domain	Parse	Confidence	Modeling Method	Model Span	Length	Date (PST)
14396	1	1	0.63	comparative modeling	1-317	317	22 Jan 2020

             1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  
   sequence: MFKYILKRLGLAVVAMFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQLQEFGFNDPIIVRYFRYWAKLFSFQADALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLGIFLGMVSGLNRGKFLDAAINVLVVLFVSIPSFVVGLGLLKLAGFLNLPPRFINFDDAFFSFDRFLLASIIPILSLVFYSSAAFTYRIRNEVVEVMNQDYIKTAKSKGLGMFAVARYHIFRNSIIPSIPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQVNETNMVMFNILFIQGIPLLASVFIEFIYVLVDPRIRIAN
    psipred: -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-----HHHHHHHHHHHH------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEHHHHHHHHHHHHHHHHHHHHHH---EEEEEE------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------
    spider3: --HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHH------HHHHHHHHHHHHHHH------HHH------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----
 deepconcnf: -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH----HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------

View

GREMLIN (Neff(80%)/√Len: 131.0)

Alignment

>14396
MFKYILKRLGLAVVAMFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQLQEFGFNDPIIVRYFRYWAKLFSFQADALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLGIFLGMVSGLNRGKFLDAAINVLVVLFVSIPSFVVGLGLLKLAGFLNLPPRFINFDDAFFSFDRFLLASIIPILSLVFYSSAAFTYRIRNEVVEVMNQDYIKTAKSKGLGMFAVARYHIFRNSIIPSIPLFVFGISGAFSGGFIIESLFGVQGVSRILIDSVQVNETNMVMFNILFIQGIPLLASVFIEFIYVLVDPRIRIAN
>3tuiA_301 weight: 0.1003 score: 9.33 eval: n/a prob: n/a identity: 0.0820 startpos: 1
------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVtaNAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIG----------------LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYgiGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR------
>3tuiA_201 weight: 0.0951 score: 182.05 eval: 1.2e-22 prob: 99.92 identity: 0.0915 startpos: 1
------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTrnAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVI--V-G-T--S---IG----LQAAI---VPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYgiGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR------
>4jbwF_w015 weight: 0.0926 score: 0.16512 eval: n/a prob: n/a identity: 0.1104 startpos: 5
LLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFAN--RKAYAWRYVYPG-MAGMGLFVLFPLVCTIAIAVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPY-AVPSFISILIFKGLFGVKPAWF------------SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIP-DDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFN-FNNFVLIQLLYTDLLVNYTYRIAFEGGGGQD-------FGLAAAIATLIFLLVGALAIVNLK--
>4xigM_w008 weight: 0.0855 score: 0.09684 eval: n/a prob: n/a identity: 0.0978 startpos: 1
ERLWKDIKRDWLLY----------------------------AMLLPTIIWF-LIFLYKPMIGLQMAFKQYI--GFDH-----FVTLFQSEQFIRAIKNTLTLSGLSLLFGFPMPILLALMINEVYSKGYRKAVQTIVYLPHFISIVIVAGLVVTFLLDRVYF------------LTQPEWFRPIYISSNIWKEAGFDSIVYLAAIMSIN-PALYESAQVDGATRWQMITRITLPCIVPTIAVLLVIRLGHILEVGFEYIILLTADVISTYIYRLGQGARYDIATAAGIFNAVVALVIVLFANHMSRRIT--KTG--
>4tqvA_w006 weight: 0.0822 score: 0.07169 eval: n/a prob: n/a identity: 0.1073 startpos: 1
ERLWKDIKRDWLLYAML--------------------------------LPTIIWFLIFLYKPMIGLQMA-FKQPWIG-FDH-FVTLFQSEQFIRAIKNTLTLSGLSLLFGFPMPILLALMINEVYSKGYRKAVQTIVYLPHFISIVIVAGLVVTFLLDRVYF------------LTQPEWFRPIYISSNIWKEAGFDSIVYLAAIMSIN-PALYESAQVDGATRWQMITRITLPCIVPTIAVLLVIRLGHILEVGFEYIILLTADVISTYIYRLGQGARYDIATAAGIFNAVVALVIVLFANHMSRRIT--K----
>4xtcM_w009 weight: 0.0810 score: 0.10517 eval: n/a prob: n/a identity: 0.1009 startpos: 1
ERLWKDIKRDWLLY----------------------------AMLLPTIIWF-LIFL--YKPMIGLQMAFKQIGFDHF------VTLFQSEQFIRAIKNTLTLSGLSLLFGFPMPILLALMINEVYSKGYRKAVQTIVYLPHFISIVIVAGLVVTFLTGVVNNMLSWIGLDRVYFLTQPEWFRPIYISSNIWKEAGFDSIVYLAAIMSIN-PALYESAQVDGATRWQMITRITLPCIVPTIAVLLVIRLGHILEVGFEYIILLTADVISTYIYRLGQGARYDIATAAGIFNAVVALVIVLFANHMSRRIT--KTG--
>3rlfF_w008 weight: 0.0764 score: 0.09431 eval: n/a prob: n/a identity: 0.1136 startpos: 3
SDALKWSVLGLLGLLVGYLVVL------------MYAQ---GEYLFAITTLI-LSSAGLYIAYAWRYVYLTNNQSGVKYRTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPY-AVPSFISILIFKGLFGVKPAWF------------SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIP-DDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFN-FNNFVLIQLLYTDLLVNYTYR-------IAFEGGGGQDFGLAAAIATLIFLLVGA----LAI--
>2r6gF_w008 weight: 0.0756 score: 0.09743 eval: n/a prob: n/a identity: 0.1104 startpos: 4
KWSVLGLLGLLVGYLVVL----------------MY---AQGEYLFAITTLI-LSSAGLYIAYAWRYVYPMAGMGLFKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGK-AVYRVLLILPYAVPSFISILIFKGLFSFGEINMMLSALFGVKPAWFDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIP-DDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFN-FNNFVLIQLLYTDLLVNYTYR-----------IAFGQDFGLAAAIATLIFLLVGA----LAI--
>4jbwH_w009 weight: 0.0756 score: 0.09379 eval: n/a prob: n/a identity: 0.1041 startpos: 61
FVLFPLVCTRAQEVLLDGLYPAGDEWQLLSDAFKFQPEGERANLRVITQNRQALSDITAMMLRQFPLYTLTNNQSGVKYRPNNQIGFYQSKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPY-AVPSFISILIFKGLFNQSFGNMMLSALFGVKPAWFDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIP-DDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFN-FNNFVLIQLLYTDLLVNYTYRIAFEGGGGQDFG---LAAAIATLIFLLVGALAIVNLKAT----
>4ki0F_w007 weight: 0.0752 score: 0.08367 eval: n/a prob: n/a identity: 0.1104 startpos: 1
SDALKWSVLGLLGL-----LVGYLV-------VLMYAQ---GEYLFAITTL-ILSSAGLYIAYAWRYVYPGMAGMGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKA-VYRVLLILPYAVPSFISILIFKGLFGVKPAWFS------------DPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDD-LYASAMDG-AGPFQNFFKITLPLLIKPLTPLMIASFAFN-FNNFVLIQLLYTDLLVNYTYR-------IAFEGGGGQDFGLAAAIATLIFLLVGALAIVN----
>2r6gG_w007 weight: 0.0743 score: 0.08141 eval: n/a prob: n/a identity: 0.0852 startpos: 6
RLFITHLLLLLFIAAIMFPLLMV-VAIS------LRQGNFATGSLIPEQI-----------SWDHWKLALGFSVITPP-----------PFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFLSLVALYALFDRLGEYIPFIGL---------------NTHGGVIFAYLG-GIALHVWTIKGYFETI-DSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA-ITEVPVASLLYT--LAVGMQQY-LNPQNYLWGDFAAAA-VMSALPITIVFLLAQRW---LV---
>4khzF_w009 weight: 0.0702 score: 0.10141 eval: n/a prob: n/a identity: 0.0915 startpos: 1
-SVLGLLGLLVGYL--VVLMYAQ-GE-----------YLFAITTLILSSAGLYIFAAYAWRYVYPGMAGMGLFVLFPKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQALGKAVYRVLLILPYAVPSFISILIFKGLFNMMLSAKPAWF------------SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAI-PDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFN-FNNFVLIQLLYTDLLVNYTYRIAF-------EGGGGQDFGLAAAIATLIFLLVGA----LAI--
>4tqvA_202 weight: 0.0039 score: 137.68 eval: 7.3e-15 prob: 99.68 identity: 0.1262 startpos: 6
--DIKRDWLLYAMLLPTIIWFLIFLYKPMI-G-LQMA-F--KQ-------PWIGF---------DHFVTLFQ----S-------------EQFIRAIKNTLTLSGLSLLFGFPMPILLALMINEVYSKGYRKAVQTIVYLPHFISIVIVAGLVVTFLSPsvVNngLDR-V--YFLT-QPEWFRPIYISSNIWKEAGFDSIVYLAAIM-SINPALYESAQVDGATRWQMITRITLPCIVPTIAVLLVIRLGHILEVGFEYIILLYQPtiSTYIYRLGLqaRYDIATAAGIFNAVVALVIVLFANHMSRRITK------
>2onkC_302 weight: 0.0036 score: 7.18 eval: n/a prob: n/a identity: 0.1325 startpos: 3
LLFSALLALLSSIILLFVLLPVAATVTLQ----------LFN---------------------FDEFLKAASD-----------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGK-SVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDA--------LPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSpfTVS-----LPLSVRHIVAGAIMSWARGISEFGAVVVIapMIAPTLIYERYLSEgaAMPVAAILILLSLAVFVALRIIVG------------
>3d31C_204 weight: 0.0033 score: 154.82 eval: 8.6e-18 prob: 99.78 identity: 0.1262 startpos: 2
------------LTFVFSFLLLVLFLFIFLT---LSNMI------FEQITE--D---------FSGLVKAAG----N-------------RSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDF-PGKRLVESIIDVPVVVPHTVAGIALLTVFGSR----GLIG-EPLES-YIQFRDALPGIVVAMLFVSMPYLANSAREGFK-SVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAypMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR--------------
>2onkC_205 weight: 0.0030 score: 138.23 eval: 9.8e-19 prob: 99.26 identity: 0.1388 startpos: 2
------RLLFSALLALLSSI---ILLFVLLP---VAATVT---LQ------LFNF--------------------DEFLKAAS------DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS-FPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLI---G--SFS---PLKFVDALPGIVVAMLFVSVPIYINQAKEGF-ASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIayPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG----------
>4ymtB_203 weight: 0.0022 score: 164.8 eval: 6.3e-20 prob: 99.84 identity: 0.1073 startpos: 1
---------------------------------------------------------------------------MTVDFLSM---VKYTPLFISGLIMTLKLTFLAVTIGVLMGLFIALMKMS-SIKPIKLVASSYIEVIRGTPLLVQLLLI--YNGL---MQF-------GM----NIPAFTAGVSALAINSSAYVAEIIRAGIQA-VDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKE----SAIVSVIGFADLTRQADisVTYRY-FEPYIIIAAIYFVMTLTFSKLLSLFERRLR---

Alignment cluster 1 [ RosettaCM constraints ]

SSGCID - MygeA.20063.a Oligopeptide transport system permease protein OppB MG_077 Domain 1 Parse 1 Confidence: 0.63 Download Results Archive Download Domain Models

SSGCID - MygeA.20063.a Oligopeptide transport system permease protein OppB MG_077 Domain 1 Parse 1 Confidence: 0.63