C. Jejuni Vaccine Domain 1 Parse 1 Confidence: 0.05

Job ID	Status	Method	Username	Target	Length	Date (PST)	Expiration Date (PST)
703554	Complete	Structure prediction	Mubashra	C. Jejuni Vaccine	389	11 May 2026	26 Jun 2026

Domain ID	Domain	Parse	Confidence	Modeling Method	Model Span	Length	Date (PST)
693379	1	1	0.05	comparative modeling	1-389	389	12 May 2026

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   sequence: MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV

Model 1

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>693379
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV
>4mtpA_101 weight: 0.5312 score: 2.82 eval: n/a prob: n/a identity: 0.0951 startpos: 94
REVLNETTNWLWAHLslCtnDPRFWEMVDEERENHLRGEccIYNMMGKREKKPGEFGKAKGS----------RamWLGARYLEFEALGFLNED-----HWLSRENSGGGV----EGSGVQKLGYILRDIAGKQgdDTAGWDTRITRTDLENEAKVLElhRMLARAIIELTYRHKVVKVMRPAAEGKTVMDVISREDQR-GSGQVVTYAleAEGVIGPQHLEQLPRKNKIAVRTWLFEnkPLdaTALHFLNAMSKVRKDIQEWKPSHGwfCSNHFQEIVMKDGRSIVVPCRGQDElrISPGAnlYFHRRDLRLMANAICSAVPVDWVPTGRT-----------SWSIHSKGEWMTTEdrVWIEENEWMMDKTPIASWTDVPYVGKREDIW
>4mtpA_302 weight: 0.4688 score: 2.82 eval: n/a prob: n/a identity: 0.0951 startpos: 94
REVLNETTNWLWAHLslCtnDPRFWEMVDEERENHLRGEccIYNMMGKREKKPGEFGKAKGS----------RamWLGARYLEFEALGFLNED-----HWLSRENSGGGV----EGSGVQKLGYILRDIAGKQgdDTAGWDTRITRTDLENEAKVLElhRMLARAIIELTYRHKVVKVMRPAAEGKTVMDVISREDQR-GSGQVVTYAleAEGVIGPQHLEQLPRKNKIAVRTWLFEnkPLdaTALHFLNAMSKVRKDIQEWKPSHGwfCSNHFQEIVMKDGRSIVVPCRGQDElrISPGAnlYFHRRDLRLMANAICSAVPVDWVPTGRT-----------SWSIHSKGEWMTTEdrVWIEENEWMMDKTPIASWTDVPYVGKREDIW

Alignment cluster 1 [ RosettaCM constraints ]

>693379
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV
>6x80A_301 weight: 0.5147 score: 2.95 eval: n/a prob: n/a identity: 0.1105 startpos: 1
---------------------------------------------------FRINTNVAALNAKANSDLNAKSLDASLSRLSsmAIADSLRSQANTLGQAISNGNDALGitADKAMDEQLKILDTIKTKATQAaqSL--------KTRTMLQADINKLMEELDNIANTTSFnqEFQIGaiGATQSSKIGVTRFETGA--QSFTSGVVGLTIKNyvVISTSVGTGLGALAEEINKSADKTGVRATYDVKTTGVYAIKEGTTSQDFAivTIGKIEYKDGDGNggVQASKDENGKLVLTSADGRGIKITGdvGSGILANQkrDINISGTNLSadMISQSSVSLRESKGQISAtgFNSYKGGGKFVFTQNVSSISAFMSAQGSGFSRGSGFSV
>6x80A_102 weight: 0.4853 score: 2.95 eval: n/a prob: n/a identity: 0.1105 startpos: 1
---------------------------------------------------FRINTNVAALNAKANSDLNAKSLDASLSRLSsmAIADSLRSQANTLGQAISNGNDALGitADKAMDEQLKILDTIKTKATQAaqSL--------KTRTMLQADINKLMEELDNIANTTSFnqEFQIGaiGATQSSKIGVTRFETGA--QSFTSGVVGLTIKNyvVISTSVGTGLGALAEEINKSADKTGVRATYDVKTTGVYAIKEGTTSQDFAivTIGKIEYKDGDGNggVQASKDENGKLVLTSADGRGIKITGdvGSGILANQkrDINISGTNLSadMISQSSVSLRESKGQISAtgFNSYKGGGKFVFTQNVSSISAFMSAQGSGFSRGSGFSV

Alignment cluster 2 [ RosettaCM constraints ]

>693379
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV
>4mtpD_303 weight: 0.5247 score: 2.69 eval: n/a prob: n/a identity: 0.1003 startpos: 69
TTPFGQQRVFKEKVDTKAPEPPavLNETTNWLWAhrEklC-------TKEEfrEAVNDPreMVDEERENHLrwLGARYLEFEALGFLNegVQKLGYILRDIAGkmYADDTAGWDTRITRTDLENEAKVLELLDGEHRMLARAIIELTyvTYALNTFTNIAVQLVRLMEAEGVIGPQHLEQLpeNGEERVTRMAISGD-----------------DCVVKPLDDRFATALHFLNAmeWKPSHGWHDW----QQVPFCSN---------HFQEIVMKD-------------GRSIVVPCRGQDELIGRARISplMANAICSAVPVDWVPTGRTS-----------WSIHSKGEWMTTEdrVWIEENEWMMDKTPIASWTDVPYVGKREDIW
>4mtpD_103 weight: 0.4753 score: 2.69 eval: n/a prob: n/a identity: 0.1003 startpos: 69
TTPFGQQRVFKEKVDTKAPEPPavLNETTNWLWAhrEklC-------TKEEfrEAVNDPreMVDEERENHLrwLGARYLEFEALGFLNegVQKLGYILRDIAGkmYADDTAGWDTRITRTDLENEAKVLELLDGEHRMLARAIIELTyvTYALNTFTNIAVQLVRLMEAEGVIGPQHLEQLpeNGEERVTRMAISGD-----------------DCVVKPLDDRFATALHFLNAmeWKPSHGWHDW----QQVPFCSN---------HFQEIVMKD-------------GRSIVVPCRGQDELIGRARISplMANAICSAVPVDWVPTGRTS-----------WSIHSKGEWMTTEdrVWIEENEWMMDKTPIASWTDVPYVGKREDIW

Alignment cluster 3 [ RosettaCM constraints ]

>693379
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV
>1kj6A_310 weight: 0.4220 score: 0.13 eval: n/a prob: n/a identity: 0.1157 startpos: 1
----------------------GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1kj6A_110 weight: 0.3146 score: 0.13 eval: n/a prob: n/a identity: 0.1157 startpos: 1
----------------------GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1kj6A_202 weight: 0.2478 score: 67.14 eval: 3.7e-07 prob: 97.86 identity: 0.1157 startpos: 1
----------------------GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1bnbA_203 weight: 0.0043 score: 54.16 eval: 5.6e-05 prob: 97.34 identity: 0.0360 startpos: 1
----------------------------APLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1fd3A_204 weight: 0.0024 score: 54.24 eval: 5.8e-05 prob: 97.3 identity: 0.0334 startpos: 1
-----------------------GIG--DPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKKP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1ut3A_205 weight: 0.0019 score: 52.14 eval: 0.00013 prob: 97.1 identity: 0.0386 startpos: 1
----------------------------SFGLCRLRRGFCARGRCRFPSIPIGRCSR-FVQCCRRVW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1e4tA_206 weight: 0.0018 score: 50.72 eval: 0.00021 prob: 96.89 identity: 0.0334 startpos: 1
---------------------------NSKRACYREGGECL-QRCIGLFHKIGTCNFR-FKCCKFQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2lg6A_207 weight: 0.0018 score: 47.96 eval: 0.0012 prob: 96.57 identity: 0.0257 startpos: 1
--------------------------------LFCKGGSCHFGGCPSHLIKVGSCFG-FRSCCAWPWNA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1e4rA_208 weight: 0.0017 score: 46.47 eval: 0.0013 prob: 96.45 identity: 0.0283 startpos: 1
---------------------------NEPVSCIRNGGICQ-YRCIGLRHKIGTCGSP-FKCCK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>5lcsA_210 weight: 0.0017 score: 50.51 eval: 0.0012 prob: 96.15 identity: 0.0334 startpos: 1
------------QPFI--PR--------PIDTCRLRNGICFPGICRRPYYWIGTCNNGIGSCCARGWRS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Alignment cluster 4 [ RosettaCM constraints ]

>693379
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV
>8sugA_304 weight: 0.5412 score: 2.55 eval: n/a prob: n/a identity: 0.0951 startpos: 1
-----------------------------------------------------VNTNIASLNTQRNLNASSNDLNTSLQRLTtlQISNRLSNQISGLNVATRNANDGISltAEGALQQSTNILQRIRDLALQsdAD---------------RAALQKEVAAQQAELTRIsvgiDISLQNASAS-AIGSYQVGSNGAGTVASVAGTATASGIASGTVNLVGGGQVKNI-----------AIAAGDSAKAIAEKMD----GAIPNLSARARTVFTADVSGVTGGsnFDVTVgnTVSLAGVTStkLGITASIngVLTITSATgvKFGAQTggQVAVKVQGSDGKFEAAAKNVVAAGTAAtyVQLNSPTagTGTQASQVFGNASAAQKSSVAS
>8sugA_104 weight: 0.4588 score: 2.55 eval: n/a prob: n/a identity: 0.0951 startpos: 1
-----------------------------------------------------VNTNIASLNTQRNLNASSNDLNTSLQRLTtlQISNRLSNQISGLNVATRNANDGISltAEGALQQSTNILQRIRDLALQsdAD---------------RAALQKEVAAQQAELTRIsvgiDISLQNASAS-AIGSYQVGSNGAGTVASVAGTATASGIASGTVNLVGGGQVKNI-----------AIAAGDSAKAIAEKMD----GAIPNLSARARTVFTADVSGVTGGsnFDVTVgnTVSLAGVTStkLGITASIngVLTITSATgvKFGAQTggQVAVKVQGSDGKFEAAAKNVVAAGTAAtyVQLNSPTagTGTQASQVFGNASAAQKSSVAS

Alignment cluster 5 [ RosettaCM constraints ]

C. Jejuni Vaccine Domain 1 Parse 1 Confidence: 0.05 Download Results Archive Download Domain Models

C. Jejuni Vaccine Domain 1 Parse 1 Confidence: 0.05