C. Jejuni Vaccine Domain 1 Parse 1 Confidence: 0.05

Job ID	Status	Method	Username	Target	Length	Date (PST)	Expiration Date (PST)
703554	Complete	Structure prediction	Mubashra	C. Jejuni Vaccine	389	11 May 2026	26 Jun 2026
Domain ID	Domain	Parse	Confidence	Modeling Method	Model Span	Length	Date (PST)
693379	1	1	0.05	comparative modeling	1-389	389	12 May 2026
Cluster 4 Templates
>693379
MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKKEAAAKSVQQNVLRLAAYSLRSQANTLAAYVQNQVTSTIAAYGVKDETAGVAAYSLRSQAATLAAYGQFNPQLWLAAYGLTLAAFAVAAYFAVDSFMAAAAYSTLGISFGFGPGPGNYSTGFANAIAISAAGPGPGDETAGVTTLKGAMAVGPGPGQSGSYAMSQANAVQQGPGPGIRDVDFAAESANFSKGPGPGKQDHKYRAQVNFSAAGPGPGVTGGYTFNETVRVGAGPGPGAGLKFRLSDSLALRLKKGIKIDGNIGGGAFINAKKVSLRESKGRFDANIADKKGEEIFYTTGSRLNGDTKKEEVADTRATPQAKCPV
>1kj6A_310 weight: 0.4220 score: 0.13 eval: n/a prob: n/a identity: 0.1157 startpos: 1
----------------------GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1kj6A_110 weight: 0.3146 score: 0.13 eval: n/a prob: n/a identity: 0.1157 startpos: 1
----------------------GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1kj6A_202 weight: 0.2478 score: 67.14 eval: 3.7e-07 prob: 97.86 identity: 0.1157 startpos: 1
----------------------GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCRRKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1bnbA_203 weight: 0.0043 score: 54.16 eval: 5.6e-05 prob: 97.34 identity: 0.0360 startpos: 1
----------------------------APLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1fd3A_204 weight: 0.0024 score: 54.24 eval: 5.8e-05 prob: 97.3 identity: 0.0334 startpos: 1
-----------------------GIG--DPVTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCKKP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1ut3A_205 weight: 0.0019 score: 52.14 eval: 0.00013 prob: 97.1 identity: 0.0386 startpos: 1
----------------------------SFGLCRLRRGFCARGRCRFPSIPIGRCSR-FVQCCRRVW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1e4tA_206 weight: 0.0018 score: 50.72 eval: 0.00021 prob: 96.89 identity: 0.0334 startpos: 1
---------------------------NSKRACYREGGECL-QRCIGLFHKIGTCNFR-FKCCKFQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>2lg6A_207 weight: 0.0018 score: 47.96 eval: 0.0012 prob: 96.57 identity: 0.0257 startpos: 1
--------------------------------LFCKGGSCHFGGCPSHLIKVGSCFG-FRSCCAWPWNA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1e4rA_208 weight: 0.0017 score: 46.47 eval: 0.0013 prob: 96.45 identity: 0.0283 startpos: 1
---------------------------NEPVSCIRNGGICQ-YRCIGLRHKIGTCGSP-FKCCK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>5lcsA_210 weight: 0.0017 score: 50.51 eval: 0.0012 prob: 96.15 identity: 0.0334 startpos: 1
------------QPFI--PR--------PIDTCRLRNGICFPGICRRPYYWIGTCNNGIGSCCARGWRS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Alignment cluster 4 [ RosettaCM constraints ]